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- ---
- tags:
- - name: subject
- pattern: "[/\\\\]+sub-([a-zA-Z0-9]+)"
- - name: session
- pattern: "[_/\\\\]+ses-([a-zA-Z0-9]+)"
- - name: datatype
- pattern: "(?:(?<!sourcedata))[/\\\\]+(genome)[/\\\\]+"
- - name: sample
- pattern: "[_/\\\\]+sample-([a-zA-Z0-9]+)"
- - name: acquisition
- pattern: "[_/\\\\]+acq-([a-zA-Z0-9]+)"
- - name: suffix
- pattern: "(?:^|[_/\\\\])([a-zA-Z0-9]+)\\.[^/\\\\]+$"
- - name: extension
- pattern: "[^./\\\\](\\.[^/\\\\]+)$"
- path_patterns:
- - "sub-{subject}[/ses-{session}]/{datatype<genome>|genome}/sub-{subject}[_ses-{session}]_sample-{sample}[_acq-{acquisition}]_{suffix<exome>|exome}{extension<.bam>}"
- - "sub-{subject}[/ses-{session}]/{datatype<genome>|genome}/sub-{subject}[_ses-{session}]_sample-{sample}[_acq-{acquisition}]_{suffix<annotated>|annotated}{extension<.vcf|.txt>}"
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